#!/bin/bash
EXPID=H03
YEAR=1976
MONTH=1
OUTPATH=/home/nersc/yanchun/output/$EXPID/ovrtrn/ 
INPATH=/home/nersc/yanchun/$EXPID/
rm -r grid.nc
ln -s $INPATH/grid.nc grid.nc
rm -r mertraindex.dat
ln -s ~/tools/data/H02_mertraindex.dat mertraindex.dat
rm -r mertraoceans.dat
ln -s ~/tools/data/H02_mertraocean.dat mertraoceans.dat
#echo $YEAR $MONTH
while [ $YEAR -le 2007 ] ; do
	while [ $MONTH -le 9 ] ; do
		rm -f in2d.nc
		rm -f in3d.nc
		ln -s $INPATH/${EXPID}_2d_${YEAR}.0${MONTH}.nc in2d.nc
		ln -s $INPATH/${EXPID}_3d_${YEAR}.0${MONTH}.nc in3d.nc
		./micom_ovrtrn
		mv ovrtrn.nc ovrtrn.$YEAR.0$MONTH.nc
		echo "ovrtrn."$YEAR".0"$MONTH".nc has generated"
		let MONTH=$MONTH+1
	done
	while [ $MONTH -le 12 ] ; do
		rm -f in2d.nc   
		rm -f in3d.nc   
		ln -s $INPATH/${EXPID}_2d_${YEAR}.${MONTH}.nc in2d.nc
		ln -s $INPATH/${EXPID}_3d_${YEAR}.${MONTH}.nc in3d.nc
		./micom_ovrtrn
		mv ovrtrn.nc ovrtrn.$YEAR.$MONTH.nc
		echo "ovrtrn."$YEAR"."$MONTH".nc has generated"
		let MONTH=$MONTH+1
	done
	let MONTH=1
	let YEAR=$YEAR+1
done